{
  "_id": "6a101e19acfb0bcc41c8a86f",
  "Package": "ciTools",
  "Type": "Package",
  "Title": "Confidence or Prediction Intervals, Quantiles, and Probabilities\nfor Statistical Models",
  "Version": "0.6.1",
  "Authors@R": "c(person(\"John\", \"Haman\", role = c(\"cre\", \"aut\"),\nemail = \"jhaman@ida.org\"),\nperson(\"Matthew\", \"Avery\", role = \"aut\",\nemail = \"mavery@ida.org\"),\nperson(\"Institute for Defense Analyses\", role = \"cph\"))",
  "Maintainer": "John Haman <jhaman@ida.org>",
  "Description": "Functions to append confidence intervals, prediction\nintervals, and other quantities of interest to data frames. All\nappended quantities are for the response variable, after\nconditioning on the model and covariates. This package has a\ndata frame first syntax that allows for easy piping. Currently\nsupported models include (log-) linear, (log-) linear mixed,\ngeneralized linear models, generalized linear mixed models, and\naccelerated failure time models.",
  "VignetteBuilder": "rmarkdown, knitr",
  "URL": "https://github.com/jthaman/ciTools",
  "BugReports": "https://github.com/jthaman/ciTools/issues",
  "License": "GPL (>=3)",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.1.1",
  "Config/pak/sysreqs": "cmake make",
  "Repository": "https://edwindj.r-universe.dev",
  "Date/Publication": "2025-08-28 11:26:40 UTC",
  "RemoteUrl": "https://github.com/edwindj/ciTools",
  "RemoteRef": "HEAD",
  "RemoteSha": "9f252bb1f24ffc49c4d0c328e2c5a525aa2d687e",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-14 07:34:51 UTC",
    "User": "root"
  },
  "Author": "John Haman [cre, aut],\nMatthew Avery [aut],\nInstitute for Defense Analyses [cph]",
  "MD5sum": "fe92f455b79dcfba3ca49e3c88942084",
  "_user": "edwindj",
  "_type": "src",
  "_file": "ciTools_0.6.1.tar.gz",
  "_fileid": "5b65b9a2b23df0b4503981a05136a43f595e9929ee32a1e8b099bdeb62eea323",
  "_filesize": 5524466,
  "_sha256": "5b65b9a2b23df0b4503981a05136a43f595e9929ee32a1e8b099bdeb62eea323",
  "_created": "2026-05-14T07:34:51.000Z",
  "_published": "2026-05-22T09:12:57.101Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77350376372,
      "time": 213,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6989559272"
    },
    {
      "job": 77350376574,
      "time": 159,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6989545252"
    },
    {
      "job": 77350376545,
      "time": 120,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6989534337"
    },
    {
      "job": 77350376768,
      "time": 153,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6989543576"
    },
    {
      "job": 77350375813,
      "time": 256,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6989503533"
    },
    {
      "job": 77350375737,
      "time": 118,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7156973010"
    },
    {
      "job": 77350376610,
      "time": 119,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6989535634"
    },
    {
      "job": 77350376549,
      "time": 122,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6989535200"
    },
    {
      "job": 77350376523,
      "time": 140,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6989539832"
    }
  ],
  "_buildurl": "https://github.com/r-universe/edwindj/actions/runs/25847848137",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/edwindj/ciTools",
  "_commit": {
    "id": "9f252bb1f24ffc49c4d0c328e2c5a525aa2d687e",
    "author": "Edwin de Jonge <edwindjonge@gmail.com>",
    "committer": "Edwin de Jonge <edwindjonge@gmail.com>",
    "message": "added support for `offset` to glm en negbin, fix for issue #25\n",
    "time": 1756380400
  },
  "_maintainer": {
    "name": "John Haman",
    "email": "jhaman@ida.org",
    "login": "jthaman",
    "uuid": 1507619
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.4.0",
      "role": "Depends"
    },
    {
      "package": "arm",
      "role": "Imports"
    },
    {
      "package": "boot",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "lme4",
      "role": "Imports"
    },
    {
      "package": "MASS",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "survival",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "here",
      "role": "Suggests"
    },
    {
      "package": "ggplot2",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "SPREDA",
      "role": "Suggests"
    }
  ],
  "_owner": "edwindj",
  "_selfowned": true,
  "_usedby": 4,
  "_updates": [
    {
      "week": "2025-33",
      "n": 1
    },
    {
      "week": "2025-35",
      "n": 1
    }
  ],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "jthaman",
      "count": 226,
      "uuid": 1507619
    },
    {
      "user": "matthewravery",
      "count": 47,
      "uuid": 30909081
    },
    {
      "user": "billdenney",
      "count": 1,
      "uuid": 10359931
    },
    {
      "user": "colin-anderson-ida",
      "count": 1,
      "uuid": 95763974
    },
    {
      "user": "edwindj",
      "count": 1,
      "uuid": 542492
    },
    {
      "user": "znmeb",
      "count": 1,
      "uuid": 4938
    }
  ],
  "_userbio": {
    "uuid": 542492,
    "type": "user",
    "name": "Edwin de Jonge"
  },
  "_downloads": {
    "count": 733,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/ciTools"
  },
  "_mentions": 4,
  "_devurl": "https://github.com/jthaman/citools",
  "_searchresults": 170,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/ciTools.html",
    "extra/contents.json",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/jthaman/citools",
  "_realowner": "jthaman",
  "_cranurl": false,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2017-08-07"
    },
    {
      "version": "0.2.0",
      "date": "2017-10-10"
    },
    {
      "version": "0.2.1",
      "date": "2017-10-18"
    },
    {
      "version": "0.3.0",
      "date": "2017-12-24"
    },
    {
      "version": "0.5.0",
      "date": "2018-10-19"
    },
    {
      "version": "0.5.1",
      "date": "2019-01-08"
    },
    {
      "version": "0.5.2",
      "date": "2020-06-12"
    },
    {
      "version": "0.6.0",
      "date": "2020-09-04"
    },
    {
      "version": "0.6.1",
      "date": "2020-10-25"
    }
  ],
  "_exports": [
    "add_ci",
    "add_pi",
    "add_probs",
    "add_quantile"
  ],
  "_help": [
    {
      "page": "add_ci",
      "title": "Add Confidence Intervals for Fitted Values to Data Frames",
      "topics": [
        "add_ci"
      ]
    },
    {
      "page": "add_ci.glm",
      "title": "Confidence Intervals for Generalized Linear Model Predictions",
      "topics": [
        "add_ci.glm"
      ]
    },
    {
      "page": "add_ci.glmerMod",
      "title": "Confidence Intervals for Generalized Linear Mixed Model Predictions",
      "topics": [
        "add_ci.glmerMod"
      ]
    },
    {
      "page": "add_ci.lm",
      "title": "Confidence Intervals for Linear Model Predictions",
      "topics": [
        "add_ci.lm"
      ]
    },
    {
      "page": "add_ci.lmerMod",
      "title": "Confidence Intervals for Linear Mixed Model Predictions",
      "topics": [
        "add_ci.lmerMod"
      ]
    },
    {
      "page": "add_ci.negbin",
      "title": "Confidence Intervals for Negative Binomial Linear Model Predictions",
      "topics": [
        "add_ci.negbin"
      ]
    },
    {
      "page": "add_ci.survreg",
      "title": "Confidence Intervals for the Mean Survival Time of Accelerated Failure Time Models.",
      "topics": [
        "add_ci.survreg"
      ]
    },
    {
      "page": "add_pi",
      "title": "Add Prediction Intervals to Data Frames",
      "topics": [
        "add_pi"
      ]
    },
    {
      "page": "add_pi.glm",
      "title": "Prediction Intervals for Generalized Linear Models",
      "topics": [
        "add_pi.glm"
      ]
    },
    {
      "page": "add_pi.glmerMod",
      "title": "Prediction Intervals for Generalized Linear Mixed Model Predictions",
      "topics": [
        "add_pi.glmerMod"
      ]
    },
    {
      "page": "add_pi.lm",
      "title": "Prediction Intervals for Linear Model Predictions",
      "topics": [
        "add_pi.lm"
      ]
    },
    {
      "page": "add_pi.lmerMod",
      "title": "Prediction Intervals for Linear Mixed Model Fitted Values",
      "topics": [
        "add_pi.lmerMod"
      ]
    },
    {
      "page": "add_pi.negbin",
      "title": "Prediction Intervals for Negative Binomial Linear Models",
      "topics": [
        "add_pi.negbin"
      ]
    },
    {
      "page": "add_pi.survreg",
      "title": "Prediction Intervals for Accelerated Failure Time Models",
      "topics": [
        "add_pi.survreg"
      ]
    },
    {
      "page": "add_probs",
      "title": "Add Regression Probabilities to Data Frames",
      "topics": [
        "add_probs"
      ]
    },
    {
      "page": "add_probs.glm",
      "title": "Response Probabilities for Generalized Linear Models",
      "topics": [
        "add_probs.glm"
      ]
    },
    {
      "page": "add_probs.glmerMod",
      "title": "Response Probabilities for Generalized Linear Mixed Model Predictions",
      "topics": [
        "add_probs.glmerMod"
      ]
    },
    {
      "page": "add_probs.lm",
      "title": "Response Level Probabilities for Linear Models",
      "topics": [
        "add_probs.lm"
      ]
    },
    {
      "page": "add_probs.lmerMod",
      "title": "Response Probabilities for Linear Mixed Models",
      "topics": [
        "add_probs.lmerMod"
      ]
    },
    {
      "page": "add_probs.negbin",
      "title": "Response Probabilities for Negative Binomial Models",
      "topics": [
        "add_probs.negbin"
      ]
    },
    {
      "page": "add_probs.survreg",
      "title": "Confidence Intervals for the Survivor Function of Accelerated Failure Time Models",
      "topics": [
        "add_probs.survreg"
      ]
    },
    {
      "page": "add_quantile",
      "title": "Add Regression Quantiles to Data Frames",
      "topics": [
        "add_quantile"
      ]
    },
    {
      "page": "add_quantile.glm",
      "title": "Quantiles for the Response of a Generalized Linear Model",
      "topics": [
        "add_quantile.glm"
      ]
    },
    {
      "page": "add_quantile.glmerMod",
      "title": "Response Quantiles for Generalized Linear Mixed Model Predictions",
      "topics": [
        "add_quantile.glmerMod"
      ]
    },
    {
      "page": "add_quantile.lm",
      "title": "Quantiles for the Response of a Linear Model",
      "topics": [
        "add_quantile.lm"
      ]
    },
    {
      "page": "add_quantile.lmerMod",
      "title": "Quantiles for the Response of a Linear Mixed Model",
      "topics": [
        "add_quantile.lmerMod"
      ]
    },
    {
      "page": "add_quantile.negbin",
      "title": "Quantiles for the Response of a Negative Binomial Regression",
      "topics": [
        "add_quantile.negbin"
      ]
    },
    {
      "page": "add_quantile.survreg",
      "title": "Confidence Intervals for Predicted Survival Time Quantiles of Accelerated Failure Time Models",
      "topics": [
        "add_quantile.survreg"
      ]
    }
  ],
  "_readme": "https://github.com/edwindj/ciTools/raw/HEAD/README.md",
  "_rundeps": [
    "abind",
    "arm",
    "boot",
    "cli",
    "coda",
    "dplyr",
    "generics",
    "glue",
    "lattice",
    "lifecycle",
    "lme4",
    "magrittr",
    "MASS",
    "Matrix",
    "minqa",
    "nlme",
    "nloptr",
    "pillar",
    "pkgconfig",
    "R6",
    "rbibutils",
    "Rcpp",
    "RcppEigen",
    "Rdpack",
    "reformulas",
    "rlang",
    "survival",
    "tibble",
    "tidyselect",
    "utf8",
    "vctrs",
    "withr"
  ],
  "_vignettes": [
    {
      "source": "ciTools_survreg_vignette.Rmd",
      "filename": "ciTools_survreg_vignette.html",
      "title": "Accelerated Failure Time Models with ciTools",
      "author": "John Haman",
      "engine": "knitr::rmarkdown",
      "headings": [
        "The Accelerated Failure Time Model",
        "Examples of AFTs",
        "AFT Uncertainty Intervals",
        "Example.",
        "The Delta Method for Regression Models",
        "Expected Values",
        "Simulation Setup",
        "Simulation for expected value CIs",
        "Survivor Function",
        "Simulations for Survivor Function",
        "Prediction Intervals"
      ],
      "created": "2019-01-03 01:08:30",
      "modified": "2020-10-22 22:44:20",
      "commits": 9
    },
    {
      "source": "ciTools-binomial-vignette.Rmd",
      "filename": "ciTools-binomial-vignette.html",
      "title": "Binomial Regression with ciTools",
      "author": "Matthew Avery",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Logistic regression with binomial data",
        "Binomial regression in R",
        "Summary"
      ],
      "created": "2017-12-02 20:09:27",
      "modified": "2020-08-17 16:06:46",
      "commits": 5
    },
    {
      "source": "ciTools-glm-vignette.Rmd",
      "filename": "ciTools-glm-vignette.html",
      "title": "Generalized Linear Models with ciTools",
      "author": "John Haman",
      "engine": "knitr::rmarkdown",
      "headings": [
        "The Generalized Linear Model",
        "Overview of ciTools methods for GLMs",
        "Confidence Intervals",
        "Logistic Regression Example",
        "Prediction Intervals",
        "Poisson Example",
        "Extension to Quasipoisson",
        "Example",
        "Simulation Study for Prediction Intervals",
        "Poisson",
        "Negative Binomial",
        "Gamma",
        "Gaussian with log link",
        "Summary",
        "Session"
      ],
      "created": "2017-12-02 20:09:27",
      "modified": "2020-08-17 16:50:00",
      "commits": 14
    },
    {
      "source": "ciTools-demo.Rmd",
      "filename": "ciTools-demo.html",
      "title": "Introducing ciTools",
      "author": "John Haman and Matthew Avery",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Overview",
        "Links",
        "Using ciTools",
        "Example",
        "Confidence Intervals",
        "Prediction Intervals",
        "Response Probabilities",
        "Response Quantiles",
        "Scope of ciTools",
        "Installation"
      ],
      "created": "2017-08-11 18:53:16",
      "modified": "2020-10-22 22:44:20",
      "commits": 7
    },
    {
      "source": "citools-merMod-vignette.Rmd",
      "filename": "citools-merMod-vignette.html",
      "title": "Mixed models with ciTools",
      "author": "Matthew Avery",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Writing down our model",
        "Types of intervals",
        "Conditional vs. unconditional confidence intervals",
        "Prediction intervals",
        "Interval demonstration",
        "Data",
        "Confidence intervals",
        "Prediction Intervals",
        "Two intervals at once!",
        "add_probs and add_quantile",
        "Simulation",
        "Unconditional confidence intervals",
        "Conditional confidence intervals",
        "Unconditional prediction intervals",
        "Conditional prediction intervals"
      ],
      "created": "2017-08-22 22:05:25",
      "modified": "2020-08-17 16:50:00",
      "commits": 6
    }
  ],
  "_score": 7.309630167425899,
  "_indexed": false,
  "_nocasepkg": "citools",
  "_universes": [
    "edwindj"
  ],
  "_indexurl": "https://jthaman.r-universe.dev/ciTools",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.6.1",
      "date": "2026-05-14T07:37:53.000Z",
      "distro": "noble",
      "commit": "9f252bb1f24ffc49c4d0c328e2c5a525aa2d687e",
      "fileid": "26ed3b973645f42ddbd1ce7543ad88fd25fdd1d0a7dbb0e8c6c5e6cac3bf4bc7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/edwindj/actions/runs/25847848137"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.6.1",
      "date": "2026-05-14T07:37:05.000Z",
      "distro": "noble",
      "commit": "9f252bb1f24ffc49c4d0c328e2c5a525aa2d687e",
      "fileid": "82c7c55d701f7bd765100a9ac012b90012f4e2fe8463d3e6487225aeec0325ec",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/edwindj/actions/runs/25847848137"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.6.1",
      "date": "2026-05-14T07:36:38.000Z",
      "commit": "9f252bb1f24ffc49c4d0c328e2c5a525aa2d687e",
      "fileid": "ac18ad705925291135a86ad44a10ce7d0381e23a29908ff936bc6de748b2d010",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/edwindj/actions/runs/25847848137"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.6.1",
      "date": "2026-05-14T07:37:00.000Z",
      "commit": "9f252bb1f24ffc49c4d0c328e2c5a525aa2d687e",
      "fileid": "f852d8fb84b918842a96523bcd31edba0b76d150cd6a815c5bb417eada3cc0e0",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/edwindj/actions/runs/25847848137"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.6.1",
      "date": "2026-05-14T07:36:21.000Z",
      "commit": "9f252bb1f24ffc49c4d0c328e2c5a525aa2d687e",
      "fileid": "9f1a460bc28af812cea6d94f033cdcc17ea59f9955e2c21fab74c8c29a5b5d3a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/edwindj/actions/runs/25847848137"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.6.1",
      "date": "2026-05-14T07:36:13.000Z",
      "commit": "9f252bb1f24ffc49c4d0c328e2c5a525aa2d687e",
      "fileid": "1138c2781b7a77ed918d13df85b12a4aa3aa3df0a06298074554ed6e41fb1601",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/edwindj/actions/runs/25847848137"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.6.1",
      "date": "2026-05-14T07:36:28.000Z",
      "commit": "9f252bb1f24ffc49c4d0c328e2c5a525aa2d687e",
      "fileid": "9228b037a6c0c9618d675791199b10fb9b2f6dee6c87f8251fb112f64836f3c8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/edwindj/actions/runs/25847848137"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.6.1",
      "date": "2026-05-22T09:12:37.000Z",
      "commit": "9f252bb1f24ffc49c4d0c328e2c5a525aa2d687e",
      "fileid": "8f35f777a8d8ef0eb557d359cbf0aca94f3bcfc6b59268eb2e775dc6081002c5",
      "status": "success",
      "buildurl": "https://github.com/r-universe/edwindj/actions/runs/25847848137"
    }
  ]
}